RF Diffusion Potentials Config¶
Provides interface for passing potential configuration to the RF Diffusion node, enabling advanced control over guiding potentials and related parameters.
Quick Start¶
- Add the RF Diffusion Potentials Config node to your workflow.
- Specify guiding potentials and other parameters as needed.
- Connect the output to the RF Diffusion node's
potentials_config
input.
Setup Guide¶
1. Insert Node¶
- Drag the RF Diffusion Potentials Config node into your workflow.
- Connect it to the RF Diffusion node.
2. Configure Potentials¶
- Define guiding potentials using the provided string format.
- Adjust scale, decay, and other options as required for your design.
Basic Usage¶
Example Use Cases¶
- Add monomer or oligomer contact potentials to guide protein generation.
- Fine-tune the influence of potentials with scale and decay settings.
- Specify custom contacts or substrate-based potentials for advanced scenarios.
Configuration¶
Required Inputs¶
Field | Description | Type | Example |
---|---|---|---|
guiding_potentials | Semicolon-separated list of potentials. Each: type:potential_type,arg1:val1,arg2:val2,... Supported types and args in tooltip. | STRING | type:monomer_ROG,weight:1,min_dist:5;type:olig_contacts,weight_intra:1,weight_inter:0.1 |
guide_scale | Scale factor for applying guiding potentials. | INT | 10 |
guide_decay | Decay type for applying guiding potentials. | COMBO | constant |
olig_inter_all | Whether all off-diagonal elements have contact potential. | BOOLEAN | False |
olig_intra_all | Whether all on-diagonal elements have contact potential. | BOOLEAN | False |
olig_custom_contact | Comma-separated contacts between chain pairs (! = repulsive, & = attractive). | STRING | A!B,B&C |
substrate | Ligand residue name in input PDB for substrate-based potentials. | STRING | LLK |
Optional Inputs¶
None
Outputs¶
Field | Description | Example |
---|---|---|
potentials_config | Configuration dict for RF Diffusion node. | { ... } |
Best Practices¶
Defining Potentials¶
- Use clear, supported types and argument names for each potential.
- Combine multiple potentials with semicolons for complex guidance.
Parameter Tuning¶
- Start with default scale and decay, then adjust for desired effect.
- Use custom contacts and substrate only when required for your design.
Troubleshooting¶
Common Issues¶
- Invalid potential format: Ensure each potential follows the required type:arg1:val1,... format and is separated by semicolons.
- Unsupported potential type: Check tooltip for supported types and arguments.
- No effect from potentials: Verify that the config is connected to the RF Diffusion node and parameters are set correctly.
Need Help?¶
- Refer to the node tooltip for supported potential types and argument details.
- Contact support for further assistance.